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Jim Hines

Email: jhines@usgs.gov

Website: http://www.mbr-pwrc.usgs.gov/software/

Areas of Study

Development of Computer Software for the Analysis of Animal Population Parameters

Publications

2014

Eaton, M. J., P. T. Hughes, J. E. Hines, and J. D. Nichols. 2014. Testing metapopulation concepts: Effects of patch characteristics and neighborhood occupancy on the dynamics of an endangered lagomorph. Oikos 123(6):662-676. Abstract

Fernandez-Chacón, A., C. Stefanescu, M. Genovart, J. D. Nichols, J. E. Hines, F. Paramo, M. Turco, and D. Oro. 2014. Determinants of extinction-colonization dynamics in Mediterranean butterflies: the role of landscape, climate and local habitat features. Journal of Animal Ecology 83(1):276-285. Abstract

Garrettson, P. R., R. V. Raftovich, J. E. Hines, and G. S. Zimmerman. 2014. Band reporting probabilities of mallards, American black ducks, and wood ducks in eastern North America. Journal of Wildlife Management 78(1):50-57. Abstract

Hines, J. E., J. D. Nichols, and J. A. Collazo. 2014. Multiseason occupancy models for correlated replicate surveys. Methods in Ecology and Evolution 5(6):583-591. Abstract

Monticelli, D., P. M. Araújo, J. E. Hines, P. Q. Tenreiro, L. P. Silva, and J. A. Ramos. 2014. Assessing the role of body mass and sex on apparent adult survival in polygynous passerines: A case study of cetti's warblers in central Portugal . Journal of Avian Biology 45(1):78-84. Abstract

Péron, G. and J. E. Hines. 2014. fatalityCMR: capture-recapture software to correct raw counts of wildlife fatalities using trial experiments for carcass detection probability and persistence time. Techniques and Methods 7-C11. USGS, Reston, VA. iv, 14 pp. Abstract

Péron, G., J. Walker, J. J. Rotella, J. E. Hines, and J. D. Nichols. 2014. Estimating nest abundance while accounting for time-to-event processes and imperfect detection. Ecology Online Early Abstract

Pillay, R., D. A. W. Miller, J. E. Hines, A. A. Joshi, and M. D. Madhusudan. 2014. Accounting for false positives improves estimates of occupancy from key informant interviews . Diversity and Distributions 20(2):223-235. Abstract

Yackulic, C. B., J. Reid, J. D. Nichols, J. E. Hines, R. Davis, and E. Forsman. 2014. The roles of competition and habitat in the dynamics of populations and species distributions. Ecology 95(2):265-279. Abstract

2013

Cerqueira, M. C., M. Mario Cohn-Haft, C. F. Vargas, C. E. Nader, C. B. Andretti, T. V. V. Costa, M. Sberze, J. E. Hines, and G. Ferraz. 2013. Rare or elusive? A test of expert knowledge about rarity of Amazon forest birds. Diversity and Distributions 19(7):710–721. Abstract

Karanth, K. K., J. D. Nichols, J. R. Sauer, J. E. Hines, and C. B. Yackulic. 2013. Latitudinal gradients in North American avian species richness, turnover rates and extinction probabilities. Ecography Online Early December 19 Abstract

Kendall, W. L., J. E. Hines, J. D. Nichols, and E. H. C. Grant. 2013. Relaxing the closure assumption in occupancy models: Staggered arrival and departure times. Ecology 94(3):610-617. Abstract

Miller, D. A. W., J. D. Nichols, J. A. Gude, L. N. Rich, K. M. Podruzny, J. E. Hines, and M. S. Mitchell. 2013. Determining occurrence dynamics when false positives occur: estimating the range dynamics of wolves from public survey data. PLoS ONE 8(6):e65808. Abstract

Nichols, J. M., J. E. Hines, and J. D. Nichols. 2013. Selecting among competing models of electro-optic,infrared camera system range performance. Optical Engineering 52(11):113108. Abstract

Péron, G., J. E. Hines, J. D. Nichols, W. L. Kendall, K. A. Peters, and D. S. Mizrahi. 2013. Estimation of bird and bat mortality at wind-power farms with superpopulation models. Journal of Applied Ecology 50(4):902-911. Abstract

2012

Breininger, D. R., M. J. Mazerolle, M. R. Bolt, M. L. Legare, J. H. Drese, and J. E. Hines. 2012. Habitat fragmentation effects on annual survival of the federally protected eastern indigo snake. Animal Conservation 15(4):361-368. Abstract

Custer, C. M., T. W. Custer, and J. E. Hines. 2012. Adult tree swallow survival on the polychlorinated biphenyl-contaminated Hudson River, New York, USA, between 2006 and 2010. Environmental Toxicology and Chemistry 31(8):1788-1792. Abstract

Gopalaswamy, A. M., J. A. Royle, J. E. Hines, P. Singh, D. Jathanna, N. S. Kumar, and K. U. Karanth. 2012. Program SPACECAP: Software for estimating animal density using spatially explicit capture-recapture models. Methods in Ecology and Evolution 3(6):1067-1072. Abstract

Kendall, W. L., G. C. White, J. E. Hines, C. A. Langtimm, and J. Yoshizaki. 2012. Estimating parameters of hidden Markov models based on marked individuals: use of robust design data. Ecology 93(4):913-920. Abstract

Miller, D. A. W., C. S. Brehme, J. E. Hines, J. D. Nichols, and R. N. Fisher. 2012. Joint estimation of habitat dynamics and species interactions: Disturbance reduces co-occurrence of non-native predators with an endangered toad. Journal of Animal Ecology 81(6):1288-1297. Abstract

Sanderlin, J. S., P. M. Waser, J. E. Hines, and J. D. Nichols. 2012. On valuing patches: estimating contributions to population growth with reverse-time capture-recapture modeling. Proceedings of the Royal Society B: Biological Sciences 279(1728):480-488. Abstract

Yackulic, C. B., J. Reid, R. Davis, J. E. Hines, J. D. Nichols, and E. Forsman. 2012. Neighborhood and habitat effects on vital rates: expansion of the Barred Owl in the Oregon Coast Ranges. Ecology 93(8):1953-1966. Abstract

2011

Forsman, E. D., R. G. Anthony, K. M. Dugger, E. M. Glenn, A. B. Franklin, G. C. White, C. J. Schwarz, K. P. Burnham, D. R. Anderson, J. D. Nichols, J. E. Hines, J. B. Lint, R. J. Davis, S. H. Ackers, L. S. Andrews, B. L. Biswell, P. C. Carlson, L. V. Diller, S. A. Gremel, D. R. Herter, J. M. Higley, R. B. Horn, J. A. Reid, J. Rockweit, J. P. Schaberl, T. J. Snetsinger, and S. G. Sovern. 2011. Population demography of northern spotted owls. Studies in avian biology 40. xii, 106 pp. Abstract

MacKenzie, D. I., L. L. Bailey, J. E. Hines, and J. D. Nichols. 2011. An integrated model of habitat and species occurrence dynamics. Methods in Ecology and Evolution 2(6):612-622. Abstract

McGowan, C. P., J. E. Hines, J. D. Nichols, J. E. Lyons, D. R. Smith, K. S. Kalasz, L. J. Niles, A. D. Dey, N. A. Clark, P. W. Atkinson, H. P. Sitters, C. D. T. Minton, and W. L. Kendall. 2011. Demographic consequences of migratory stopover: linking red knot survival to horseshoe crab spawning abundance. Ecosphere 2(6):article 69. Abstract , PDF

Zeller, K. A., S. Nijhawan, R. Salom-Pérez, S. H. Potosme, and J. E. Hines. 2011. Integrating occupancy modeling and interview data for corridor identification: A case study for jaguars in Nicaragua. Biological Conservation 144(2):892-901. Abstract

2010

Blakesley, J. A., M. E. Seamans, M. M. Conner, A. B. Franklin, G. C. White, R. J. Gutierrez, J. E. Hines, J. D. Nichols, T. E. Munton, D. W. H. Shaw, J. J. Keane, G. N. Steger, and T. L. McDonald. 2010. Population dynamics of spotted owls in the Sierra Nevada, California. Wildlife Monographs No. 174:1-36. Abstract

Hines, J. E., J. D. Nichols, J. A. Royle, D. I. MacKenzie, A. M. Gopalaswamy, N. S. Kumar, and K. U. Karanth. 2010. Tigers on trails: occupancy modeling for cluster sampling. Ecological Applications 20(5):1456-1466. Abstract

Karanth, K. K., J. D. Nichols, and J. E. Hines. 2010. Occurrence and distribution of Indian primates. Biological Conservation 143(12):2891-2899. Abstract

Karanth, K. K., J. D. Nichols, K. U. Karanth, J. E. Hines, and N. L. Christensen. 2010. The shrinking ark: patterns of large mammal extinctions in India. Proceedings of the Royal Society B: Biological Sciences 277(1690):1971-1979. Abstract

Martin, J., S. Chamaillé-Jammes, J. D. Nichols, H. Fritz, J. E. Hines, C. J. Fonnesbeck, D. I. MacKenzie, and L. L. Bailey. 2010. Simultaneous modeling of habitat suitability, occupancy, and relative abundance: African elephants in Zimbabwe. Ecological Applications 20(4):1173-1182. Abstract

Richmond, O. M. W., J. E. Hines, and S. R. Beissinger. 2010. Two-species occupancy models: a new parameterization applied to co-occurrence of secretive rails. Ecological Applications 20(7):2036-2046. Abstract

2009

Converse, S. J., W. L. Kendall, P. F. Doherty, Jr., M. B. Naughton, and J. E. Hines. 2009. A traditional and a less-invasive robust design: choices in optimizing effort allocation for seabird population studies. Pages 727-744 in David L. Thomson, Evan G. Cooch, and Michael J. Conroy, editors. Modeling demographic processes in marked populations. Environmental and ecological statistics 3. Springer, New York . xxiv, 1131 pp. Abstract

Karanth, K. K., J. D. Nichols, J. E. Hines, K. U. Karanth, and N. L. Christensen. 2009. Patterns and determinants of mammal species occurrence in India. Journal of Applied Ecology 46(6):1189-1200. Abstract

Kendall, W. L., S. J. Converse, P. F. Doherty, Jr., M. B. Naughton, A. Anders, J. E. Hines, and E. Flint. 2009. Sampling design considerations for demographic studies: a case of colonial seabirds. Ecological Applications 19(1):55-68. Abstract

Kendall, W. L., S. J. Converse, P. F. Doherty, Jr., M. B. Naughton, J. E. Hines, A. Anders, and E. Flint. 2009. Design considerations in demographic studies: a case of colonial seabirds. Ecological Applications 19(1):55-68. Abstract

Martin, J., C. L. McIntyre, J. E. Hines, J. D. Nichols, J. A. Schmutz, and M. C. MacCluskie. 2009. Dynamic multistate site occupancy models to evaluate hypotheses relevant to conservation of Golden Eagles in Denali National Park, Alaska. Biological Conservation 142(11):2726-2731. Abstract

Martin, J., J. D. Nichols, C. L. McIntyre, G. Ferraz, and J. E. Hines. 2009. Perturbation analysis for patch occupancy dynamics. Ecology 90(1):10-16. Abstract

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